Index _ | A | B | C | D | E | F | G | I | L | M | N | O | P | R | S | T | V _ __init__() (spectoprep.pipeline.optimizer.PipelineOptimizer method) A ALSBaselineCorrection (class in spectoprep.preprocessing.baseline) Autoscaling (class in spectoprep.preprocessing.norml) B baseline_ (spectoprep.preprocessing.baseline.ALSBaselineCorrection attribute) bayes_objective() (spectoprep.pipeline.optimizer.PipelineOptimizer method) bayesian_optimize() (spectoprep.pipeline.optimizer.PipelineOptimizer method) build_preprocessor_from_bayes() (in module spectoprep.pipeline.builder) C calculate_r2() (in module spectoprep.pipeline.utils) calculate_rmse() (in module spectoprep.pipeline.utils) choose_nearest() (in module spectoprep.pipeline.utils) ColumnStandardizer (class in spectoprep.preprocessing.norml) configure_logging() (in module spectoprep.logging) D DetrendTransformer (class in spectoprep.preprocessing.baseline) E export_best_pipeline() (spectoprep.pipeline.optimizer.PipelineOptimizer method) ExtendedMultiplicativeScatterCorrection (class in spectoprep.preprocessing.scatter) F fit() (spectoprep.modelling.ridge.OptimizedRidgeCV method) (spectoprep.preprocessing.baseline.ALSBaselineCorrection method) (spectoprep.preprocessing.baseline.DetrendTransformer method) (spectoprep.preprocessing.norml.Autoscaling method) (spectoprep.preprocessing.norml.ColumnStandardizer method) (spectoprep.preprocessing.norml.GlobalScaler method) (spectoprep.preprocessing.norml.MeanCentering method) (spectoprep.preprocessing.norml.Normalization method) (spectoprep.preprocessing.norml.RowStandardizer method) (spectoprep.preprocessing.scatter.ExtendedMultiplicativeScatterCorrection method) (spectoprep.preprocessing.scatter.LocalizedSNV method) (spectoprep.preprocessing.scatter.MultiplicativeScatterCorrection method) (spectoprep.preprocessing.scatter.RobustNormalVariate method) (spectoprep.preprocessing.scatter.StandardNormalVariate method) (spectoprep.preprocessing.smoothing.SavitzkyGolay method) G generate_pipeline_configurations() (in module spectoprep.pipeline.utils) get_all_tested_pipelines() (spectoprep.pipeline.optimizer.PipelineOptimizer method) get_best_pipeline_predictions() (spectoprep.pipeline.optimizer.PipelineOptimizer method) get_cv_results() (spectoprep.modelling.ridge.OptimizedRidgeCV method) get_logger() (in module spectoprep.logging) GlobalScaler (class in spectoprep.preprocessing.norml) I info() (in module spectoprep.cli) is_fitted_ (spectoprep.preprocessing.baseline.ALSBaselineCorrection attribute) (spectoprep.preprocessing.norml.Normalization attribute) (spectoprep.preprocessing.scatter.StandardNormalVariate attribute) is_valid_pipeline() (in module spectoprep.pipeline.utils) L LocalizedSNV (class in spectoprep.preprocessing.scatter) M main() (in module spectoprep.cli) max_ (spectoprep.preprocessing.norml.Normalization attribute) mean_ (spectoprep.preprocessing.norml.Autoscaling attribute) (spectoprep.preprocessing.norml.MeanCentering attribute) (spectoprep.preprocessing.norml.Normalization attribute) (spectoprep.preprocessing.scatter.StandardNormalVariate attribute) mean_reference (spectoprep.preprocessing.scatter.MultiplicativeScatterCorrection attribute) MeanCentering (class in spectoprep.preprocessing.norml) min_ (spectoprep.preprocessing.norml.Normalization attribute) module spectoprep spectoprep.cli spectoprep.logging spectoprep.modelling.ridge spectoprep.pipeline.builder spectoprep.pipeline.config spectoprep.pipeline.optimizer spectoprep.pipeline.utils spectoprep.preprocessing.baseline spectoprep.preprocessing.norml spectoprep.preprocessing.scatter spectoprep.preprocessing.smoothing spectoprep.visualization.plots MultiplicativeScatterCorrection (class in spectoprep.preprocessing.scatter) N Normalization (class in spectoprep.preprocessing.norml) O OptimizedRidgeCV (class in spectoprep.modelling.ridge) P PipelineOptimizer (class in spectoprep.pipeline.optimizer) plot_feature_importance() (spectoprep.visualization.plots.SpectroPrepPlotter static method) plot_optimization_progress() (spectoprep.visualization.plots.SpectroPrepPlotter static method) plot_optimization_results() (spectoprep.visualization.plots.SpectroPrepPlotter static method) plot_prediction_scatter() (spectoprep.visualization.plots.SpectroPrepPlotter static method) plot_preprocessing_comparison() (spectoprep.visualization.plots.SpectroPrepPlotter static method) plot_spectra() (spectoprep.visualization.plots.SpectroPrepPlotter static method) predict() (spectoprep.modelling.ridge.OptimizedRidgeCV method) print_evaluated_pipelines() (spectoprep.pipeline.optimizer.PipelineOptimizer method) R reference_spectrum (spectoprep.preprocessing.scatter.ExtendedMultiplicativeScatterCorrection attribute) RobustNormalVariate (class in spectoprep.preprocessing.scatter) RowStandardizer (class in spectoprep.preprocessing.norml) S SavitzkyGolay (class in spectoprep.preprocessing.smoothing) score() (spectoprep.modelling.ridge.OptimizedRidgeCV method) set_fit_request() (spectoprep.modelling.ridge.OptimizedRidgeCV method) set_score_request() (spectoprep.modelling.ridge.OptimizedRidgeCV method) set_style() (spectoprep.visualization.plots.SpectroPrepPlotter static method) spectoprep module spectoprep.cli module spectoprep.logging module spectoprep.modelling.ridge module spectoprep.pipeline.builder module spectoprep.pipeline.config module spectoprep.pipeline.optimizer module spectoprep.pipeline.utils module spectoprep.preprocessing.baseline module spectoprep.preprocessing.norml module spectoprep.preprocessing.scatter module spectoprep.preprocessing.smoothing module spectoprep.visualization.plots module SpectroPrepPlotter (class in spectoprep.visualization.plots) StandardNormalVariate (class in spectoprep.preprocessing.scatter) std_ (spectoprep.preprocessing.norml.Autoscaling attribute) (spectoprep.preprocessing.norml.Normalization attribute) (spectoprep.preprocessing.scatter.StandardNormalVariate attribute) summarize_optimization() (spectoprep.pipeline.optimizer.PipelineOptimizer method) T transform() (spectoprep.preprocessing.baseline.ALSBaselineCorrection method) (spectoprep.preprocessing.baseline.DetrendTransformer method) (spectoprep.preprocessing.norml.Autoscaling method) (spectoprep.preprocessing.norml.ColumnStandardizer method) (spectoprep.preprocessing.norml.GlobalScaler method) (spectoprep.preprocessing.norml.MeanCentering method) (spectoprep.preprocessing.norml.Normalization method) (spectoprep.preprocessing.norml.RowStandardizer method) (spectoprep.preprocessing.scatter.ExtendedMultiplicativeScatterCorrection method) (spectoprep.preprocessing.scatter.LocalizedSNV method) (spectoprep.preprocessing.scatter.MultiplicativeScatterCorrection method) (spectoprep.preprocessing.scatter.RobustNormalVariate method) (spectoprep.preprocessing.scatter.StandardNormalVariate method) (spectoprep.preprocessing.smoothing.SavitzkyGolay method) V version() (in module spectoprep.cli)